FACS Facility 

 

Department of Microbiology and Cell Biology 

 

Indian Institute of Science

 

(A Central Facility under Division of Biological Sciences)

FACS (Fluorescence Activated Cell Sorter) facility was established in 1997 with   support from DBT, Govt. of India. There are five flow cytometers for advanced scientific research. BD FACScan, BD FACS Calibur™, BD FACS Canto™ II , Beckman Coulter MoFlo Legacy High Speed Cell Sorter & Analyzer, and BD FACS Aria™II.  BD FACScan, BD FACS Calibur™ and BD FACS Canto™ II  are analyzers whereas MoFlo Legacy and BD FACS Aria™II are cell sorters with advanced features. All the flow cytometers are operator assisted. Moreover, FACS facility has offline analysis systems for data analysis by flow cytometer users. This is a central facility of Division of Biological Sciences and is administered by Department of Microbiology and Cell Biology, IISc.

    FACS Committee members 

  1. Prof. Dipankar Nandi, Department of Biochemistry, Convener

  2. Prof. Paturu Kondaiah,  Department of Molecular Reproduction, Development and Genetics

  3. Prof. R Manjunath, Department of Biochemistry

  4. Prof. Dipshikha Chakravortty, Department of Microbiology and Cell Biology

  5. Prof. K N Balaji,  Department of Microbiology and Cell Biology

  6. Prof. Annapoorni Rangarajan, Department of Molecular Reproduction, Development and Genetics

Dr. William R. Surin, PhD

Scientific Officer, FACS Facility

Dept. of Microbiology & Cell Biology

Indian Institute of Science

Bangalore-560012

Phone: +91-80-22933451 ,

Fax:  +91-80-23602697, Email: wrsurin@mcbl.iisc.ernet.in ,  

         FACS Facility members:

         Dr. Omana Joy, Project Associate

         Ms. Puja Pai, Project Assistant

         Ms. Kavya A, Project Assistant

 

         Flow Cytometers: Analyzers

BD FACScan:

Single Laser with 3-color parameters. Mac operating system with CellQuestPro Software for acquisition & analysis.

Laser Specifications:15mW 488nm, air-cooled argon-ion laser

Parameters: Forward Scatter, Side Scatter, FL1, FL2 and FL3

 

 

BD FACSCaliburTM:It is dual laser with 4-color parameters. Mac  operating system  with   CellQuestPro Software for acquisition & analysis.

Laser Specifications:15mW 488nm, air-cooled argon-ion laser; Red diode laser, 635nm

Fluorescence Detectors and Filters: High performance, high dynamic range photo- multipliers with bandpass filters : 530nm (FITC), 585nm (PE/PI), 661nm (APC) and >650nm (PerCP) with base unit, >670nm (PerCP) with FL4 option

Sample Flow rate: Three selectable flow rates of 60mL/min, 35mL/min and 12mL/min. Particle velocity in flow cell is approximately 6 meters/sec

Sample Concentration: Single-cell suspension of 105 to 2 x 107 particles/mL recommended range. Kindly use 12 x 75-mm polystyrene tubes (Falcon) (Part No. 54-10001-00) for samples for acquisition.

BD FACSCantoTMII: It is configured with 3 lasers and 8 fluorescence parametersWindows XP operating system with FACS DivaTM Software for acquisition & analysis

Laser Specifications: Air-cooled, 20 mW solid state 488 nm, 17 mW HeNe 633 nm laser and 10mW–17mW Point Source Violet solid state laser 405nm 

Optics configurations: 

FSC Detector Photodiode with 488/10BP, 

SSC Detector PMT with 488/10BP

Fluorescence Detectors: 8 PMTs in 4+2+2 configuration

Four wavelengths detected from the 488-nm laser (standard filters): (1).  515–545 nm FITC  (2). 564–606 nm PE  (3).  670LP nm PE-Cy™5 or PerCP (4).  750–810 nm PE-Cy™7

Two wavelengths detected from the 633-nm laser (standard filters): (1). 650–670 nm APC (2). 750–810 nm APC-Cy7

Two wavelengths detected from the 405-nm laser (standard filters): (1). 485–535 nm AmCyan (2).  425–475 nm Pacific Blue™ 

Features:

Sample Injection: Direct into flow cell

Max Particle Size: 50 μm

Flow Rate, min: 10 μL/min

Flow Rate, max: 120 μL/min

Sample Acquisition Rate: 10,000 events/sec, 10 channels with 8 compensated fluorescent parameters

Nominal Minimum Sample Volume: 30 μL

             

                Flow Cytometers: Cell Sorters

BD FACSAriaTMII: It is having three lasers with 9-color parameters. Windows XP operating system with FACS DivaTM Software for acquisition, analysis and sorting.

Laser Specifications: 488-nm Coherent® SapphireTM solid state (13mW–20mW), 633-nm JDS UniphaseTM HeNe air-cooled(10mW–20mW), 375-nm near UV, air launched laser (7–10 mW). All lasers are Class IIIb.

Fluorescence Detectors: 9 PMTs in 5+2+2 configuration

Five wavelengths detected from the 488-nm laser (standard filters): (1).  515–545 nm FITC, (2). 564–606 nm or 563–589 nm PE,  (3). 600–620 nm PE-Texas Red® (4).  675–715 nm or 665–685 nm PE-Cy™5 or PerCP or PI, (5).  750–810 nm PE-Cy™7

Two wavelengths detected from the 633-nm laser (standard filters): (1). 650–670 nm APC (2). 750–810 nm APC-Cy7

Two wavelengths detected from the 375-nm laser (standard filters): (1). 430–470 nm Hoechst blue emission (2). 675 nm Long pass Hoechst red emission

Features: 

Sheath pressure is adjustable from 5 to 75 psi. Filters and mirrors are user changeable. Maximum acquisition rate (events per second) with 12 compensation pairs and 8 parameters: 70,000 events/sec.

Purity and Yield

At 70 psi and 90 kHz with an average threshold rate of 25,000 events per second, a four-way sort achieved a purity of >98% and a yield >80% of Poisson’s expected yield. Higher threshold rates of up to 70,000 events per second can be achieved without affecting purity; however, yield will decrease based on Poisson statistics.

Viability

All sorts resulted in cells that proved viable and proliferated for several days post-sort.

Sort Collection Devices

Two-way sorting: microtubes, 12 x 75 mm, and 15 mL

Four-way sorting: microtubes and 12 x 75 mm

Automatic Cell Deposition Unit (ACDU) for slide and plate sorting: 6, 24, 48, 96, and 384-well plates

Contact person: Dr. Omana Joy

Features: 

Sample Injection Chamber; Sample Input Sizes

Microtubes, 12 x 75 mm, and 15 mL Polystyrene or polypropylene tubes can be used.

Sample Flow Rates

Adjustable sample pressures from 1 to 11

Sample Input Agitation

Adjustable through the software to keep sample constantly suspended

Temperature Control

Sample input, software-adjustable: 4, 20, 37, and 42°C

Sample output for sort collection: water refrigerator or heater option is available to provide cooling or heating for sort collection into tube holders, multi-well plates, and slides

BD FACS Accudrop

• Red diode laser provided for manual or fully automated drop-delay determination

• Automated drop break-off monitoring

• Automated clog detection system using Sweet Spot technology

MoFLo Legacy Cell Sorter & Analyser: It is dual laser lasers (488nm and 350nm) with 5-color parameters. Windows XP operating system with SummitTM Software for acquisition, analysis and sorting.

Laser Specifications: 488nm iCyte 30-200mW air cooled solid state laser and 350nm JDSU UV air cooled laser (2 color)

Fluorescence Detectors: 5 PMTs in 3+2 configuration

Three wavelengths detected from the 488-nm laser: (FL1).  510–550 nm  (FL2). 565–605 nm  (FL3).  603-623 nm 

Two wavelengths detected from the 350-nm laser: (FL6). 418–483 nm  (FL7). 615–645 nm 

For details contact: Dr. William R Surin

Contact Us: @

Flow Cytometry Facility

Ground Floor, GCCL-01, Biological Sciences Building,

Indian Institute of Science

Bangalore-560012, Tel: +91-80-22933451                                                     

Some useful links:

The Cytometry Society, India

International Society for Advancement of Cytometry

by wrsurin@mcbl.iisc.ernet.in,    Last updated on 26th March, 2012